refalisting.blogg.se - Geneious prime version

De Novo Assembly and Map to Reference(s): Now fails promptly instead of sometimes continuing after running out of memory.De Novo Assembly: Fixed it sometimes producing results containing mismatches when the maximum mismatches settings was set to 0.Dark Mode: Brightened the Sequence Viewer selected number color.

Command Line Interface: Fixed bug where documents in the local database could not be found.CRISPR: Added a maximum gap size option to Analyzing CRISPR Editing Results.Fixed pressing delete in the Annotations Table sometimes not deleting the selected annotation(s).Fixed a crash when exporting an annotation table with the "Paired Primer" column.User Interface: Dropdowns now support filtering and more clearly show when it is possible to enter custom value.Preprocessing: BBDuk no longer requires a separate plugin to use.

General: Progress reporting for loading selected documents on network databases no longer blocks user activity.

Geneious Academy: Added a shortcut to the new Geneious Academy in the Help menu.

Command Line Interface: Now supports using database folders as inputs.

CRISPR: Enabled selection of individual off-target sequences.

Minor Features and Usability Improvements:

Workflows: Added new workflow for batch exporting multiple sequences as individual images.

STAR: Added STAR, a RNA-seq mapper that performs highly accurate spliced sequence alignment.

Primer Design: Added a new tool for primer specificity testing.

Cloning Validation: Added a new tool for automating sequence alignment during batch plasmid validation.

CRISPR: Added more PAMs to Find CRISPR Sites.

NCBI Structural Database & PDB Import: Fixed a bug where loading PDB documents crashed if Beta Sheets were at positions with index >= 1000.

Java: Updated bundled JRE version to 11.0.18+10.

Import: Primers in DNAStar Lasergene SeqBuilder(Pro).

DESeq2: Newer versions of Bioconductor are now recognised and supported on Linux.

Contig View: Fixed occasional crash when sorting large contigs.

Cloud: Fixed some crashes when logging out of the Cloud Workspace.

Cloning Validation: Fixed a rare bug where using the filter could cause a crash.

BLAST: Fixed a crash when using a sequence that has gaps and qualities as input.

Workflows: Fixed a bug where documents exported as TSV contained unselected fields.

Protein Structure Alignment: Fixed overzealous check for multiple models when aligning PDB documents.

Primer Design: Fixed included region option not being selected on fresh installs when a region was selected.

Plugins: Fixed rare crash in Microsatellite plugin.

PDB Importer: Better handling of PDB files created by RoseTTAFold.

Fixed an issue where opening sequence view in a pop-out window does not work sometimes.

Increased the Log4j version used by geneious from 2.17.1 to 2.19.0.

Document Info: Improved save performance when documents have many metadata sections.

Cloning Validation: Fixed a rare drag and drop bug.

BLAST: Percentage will no longer display rounded values when they are close but not exactly 100% or 0%.

Annotations: Fixed a bug where some annotations had properties incorrectly reverse complemented.

Dotmatics Platform Integration Plugin: Added a plugin that adds ability to register sequences in Bioregister.

Import: Added ability to import DNAStar Lasergene SeqBuilder(Pro).

Geneious Cloud Database (beta): Added a new cloud database, which provides access to 10GB of free, secure personal data storage.